Btrfs/Deduplication/Bees

Deduplication with Bees

Bee hotel tubes opened with nests of the European orchard bee, at different development stage.

Bees is perhaps the most unique tool as it is specifically made to work only with Btrfs filesystems. It is different in several ways:

1. It uses a very lightweight database (hash table) to keep track of deduplication progress. You can stop and restart and it continues from where it left off.
2. Memory usage is fixed and never grows beyond database size and a small amount for the bees runtime, whereas most other dedup tools grow to multi gigabyte RAM usage)
3. It runs continuously in the background, deduplicating any newly written data.
4. It runs only on whole filesystems, not on a limited set of files.
5. Bees can split extents to achieve better deduplication results.

Make sure you have a recent kernel. Some kernel versions has bugs triggered by Bees, so please check https://github.com/Zygo/bees/blob/master/docs/btrfs-kernel.md before continuing.

Configuration

First you need to determine the UUID of the filesystem you want to run Bees on. Use btrfs filesystem show to list all Btrfs filesystems with their UUID's.

# btrfs filesystem show
Label: 'btrfs-root'  uuid: 446d32cb-a6da-45f0-9246-1483ad3420e0
        Total devices 1 FS bytes used 35.04GiB
        devid    1 size 229.47GiB used 79.03GiB path /dev/sda3

Label: '6TB'  uuid: fe0a1142-51ab-4181-b635-adbf9f4ea6e6
        Total devices 2 FS bytes used 3.48TiB
        devid    2 size 2.72TiB used 2.21TiB path /dev/sdc2
        devid    3 size 1.82TiB used 1.30TiB path /dev/sdb2

Label: 'btrfs-boot'  uuid: 1128e72e-b00f-4c2a-a1e1-afa89f3c11cc
        Total devices 1 FS bytes used 70.55MiB
        devid    1 size 1.00GiB used 256.00MiB path /dev/sda2

Label: 'usb-backup'  uuid: df68a30d-d26e-4b9c-9606-a130e66ce63d
        Total devices 1 FS bytes used 581.47GiB
        devid    1 size 927.51GiB used 591.02GiB path /dev/sdd1

We'll use the fe0a1142-51ab-4181-b635-adbf9f4ea6e6 in this guide.

Now we can create the Bees configuration file /etc/bees/6TB.conf. You can use any name on the file with a .conf file extension.

# /etc/bees/6TB.conf
# UUID of the filesystem 
UUID=fe0a1142-51ab-4181-b635-adbf9f4ea6e6

# Specify the bees database size. It has to be a multiple of 128KiB
DB_SIZE=$((256*1024*1024)) # 256MiB in bytes

The database size determines how efficient Bees will be on your filesystem. The database has to fit in RAM, so make sure you have enough RAM available to run Bees with the selected database size.

Unique data size	Database size	Average dedupe extent size
1TiB	4GiB	4KiB
1TiB	1GiB	16KiB
1TiB	256MiB	64KiB
1TiB	128MiB	128KiB <- recommended
1TiB	16MiB	1024KiB
64TiB	1GiB	1024KiB

Running Bees

Once you have the configuration set up we can run the Bees daemon beesd UUID

# beesd fe0a1142-51ab-4181-b635-adbf9f4ea6e6

I recommend to run bees inside a screen terminal or as a daemon. Bees comes with a systemd unit file: https://github.com/Zygo/bees/tree/master/scripts

Bees Stats

Bees will store various statistics and other files:

Path	Contents
/run/bees/uuid.status	Current running stats of bees.
/run/bees/mnt/uuid/.beeshome/beescrawl.dat	Bees crawler stats
/run/bees/mnt/uuid/.beeshome/beeshash.dat	Bees database
/run/bees/mnt/uuid/.beeshome/beesstats.txt	Bees statistics, database usage.